If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ), 'gf_id' => 'HOM05D000764', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000764' ), 'data_identifier' => 'HOM05D000764', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000764', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '766', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p23610' => 'bna', 'A02p36380' => 'bna', 'A02p41160' => 'bna', 'A03p46460' => 'bna', 'A05p17530' => 'bna', 'A06p00260' => 'bna', 'Aa31LG10G1080' => 'aar', 'Aa31LG10G1120' => 'aar', 'Aa31LG11G2540' => 'aar', 'Aa31LG11G2550' => 'aar', 'Aa31LG1G14810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2374' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2749' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.935' => 'aag', 'Actinidia02700' => 'ach', 'Actinidia02701' => 'ach', 'Actinidia06846' => 'ach', 'Actinidia15647' => 'ach', 'Actinidia16063' => 'ach', 'Actinidia18956' => 'ach', 'Actinidia26077' => 'ach', 'Actinidia31041' => 'ach', 'Actinidia35065' => 'ach', 'Ah.03g141580' => 'amhyb', 'Ah.06g190560' => 'amhyb', 'Ah.11g047290' => 'amhyb', 'Ah.13g074720' => 'amhyb', 'AL1G63360' => 'aly', 'AL1G63370' => 'aly', 'AL5G31570' => 'aly', 'AL6G34210' => 'aly', 'AL6G34220' => 'aly', 'Aqoxy1G00434' => 'aox', 'Aqoxy368s001' => 'aox', 'Aqoxy3G00558' => 'aox', 'Aqoxy3G01104' => 'aox', 'Aqoxy3G03822' => 'aox', 'Aqoxy3G03830' => 'aox', 'Aqoxy6G02541' => 'aox', 'Aqoxy6G02562' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0H6YGR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1KQ3UY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5ZFR0R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP6C7G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CY8ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GHI7N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2JIZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ML2TY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKU5VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJI57B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VB8JJE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7TQKX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WYF852' => 'arhy', 'AT1G55320' => 'ath', 'AT1G55325' => 'ath', 'AT3G51140' => 'ath', 'AT5G23040' => 'ath', 'AT5G23050' => 'ath', 'ATR0001G035' => 'atr', 'ATR0490G003' => 'atr', 'ATR0688G001' => 'atr', 'ATR0691G223' => 'atr', 'ATR0691G282' => 'atr', 'ATR0770G001' => 'atr', 'ATR0921G009' => 'atr', 'ATR0947G001' => 'atr', 'Atru.chr3.2095' => 'acertr', 'Atru.chr3.2354' => 'acertr', 'Atru.chr3.2383' => 'acertr', 'Atru.chr9.689' => 'acertr', 'Atru.chr9.691' => 'acertr', 'Atru.chr9.692' => 'acertr', 'AUR62007653' => 'cqu', 'AUR62019164' => 'cqu', 'AUR62019165' => 'cqu', 'AUR62019181' => 'cqu', 'AUR62032163' => 'cqu', 'AUR62032165' => 'cqu', 'AUR62036921' => 'cqu', 'AUR62036923' => 'cqu', 'AUR62040904' => 'cqu', 'BcaB07g29868' => 'bca', 'BcaC03g18039' => 'bca', 'BcaC06g33052' => 'bca', 'BcaC06g33191' => 'bca', 'BcaC06g33192' => 'bca', 'BcaC08g44192' => 'bca', 'BcaC09g49683' => 'bca', 'BcaC09g50084' => 'bca', 'BcaNung02625' => 'bca', 'BcaNung02626' => 'bca', 'BcaNung05766' => 'bca', 'BcaNung05767' => 'bca', 'BolC1t02855H' => 'bol', 'BolC1t03367H' => 'bol', 'BolC2t12152H' => 'bol', 'BolC3t13522H' => 'bol', 'BolC3t20030H' => 'bol', 'BolC6t36102H' => 'bol', 'BolC6t36790H' => 'bol', 'BolC7t44970H' => 'bol', 'BolC7t44971H' => 'bol', 'BolC7t45135H' => 'bol', 'BraA01t02267Z' => 'bra', 'BraA02t08636Z' => 'bra', 'BraA02t09061Z' => 'bra', 'BraA03t13772Z' => 'bra', 'BraA03t13923Z' => 'bra', 'BraA05t20647Z' => 'bra', 'BraA06t23242Z' => 'bra', 'BraA06t23243Z' => 'bra', 'BraA09t39880Z' => 'bra', 'C01p29290' => 'bna', 'C01p33980' => 'bna', 'C02p61040' => 'bna', 'C06p10270' => 'bna', 'C06p15980' => 'bna', 'C07p44510' => 'bna', 'C07p46190' => 'bna', 'C07p61900' => 'bna', 'CAN.G1237.21' => 'can', 'CAN.G1237.22' => 'can', 'CAN.G1237.23' => 'can', 'CAN.G1237.43' => 'can', 'CAN.G1237.45' => 'can', 'CAN.G1237.46' => 'can', 'CAN.G1248.23' => 'can', 'CAN.G1385.2' => 'can', 'CAN.G3.45' => 'can', 'CAN.G4315.1' => 'can', 'CAN.G575.3' => 'can', 'CAN.G610.44' => 'can', 'CAN.G693.4' => 'can', 'CAN.G781.24' => 'can', 'CAN.G982.6' => 'can', 'CAN.G982.7' => 'can', 'CANSAT01G3117' => 'cansat', 'CANSAT11G1226' => 'cansat', 'CANSAT78G0430' => 'cansat', 'CANSAT78G1467' => 'cansat', 'CANSAT80G0200' => 'cansat', 'CANSAT80G0368' => 'cansat', 'CANSAT80G0687' => 'cansat', 'CARHR044970' => 'chi', 'CARHR044980' => 'chi', 'CARHR160740' => 'chi', 'CARHR190480' => 'chi', 'CARHR190490' => 'chi', 'Carub.0001s4382' => 'cru', 'Carub.0001s4383' => 'cru', 'Carub.0005s1754' => 'cru', 'Carub.0006s2082' => 'cru', 'Carub.0006s2083' => 'cru', 'Ca_02632_v3' => 'car', 'Ca_16376_v3' => 'car', 'Ca_17929_v3' => 'car', 'Ca_17951_v3' => 'car', 'Ca_21733_v3' => 'car', 'Ca_22362_v3' => 'car', 'Ca_30883_v3' => 'car', 'CBR_g28576' => 'cbr', 'CBR_g50877' => 'cbr', 'Cc00_g16520' => 'ccan', 'Cc00_g16530' => 'ccan', 'Cc01_g00030' => 'ccan', 'Cc01_g02010' => 'ccan', 'Cc01_g02040' => 'ccan', 'Cc04_g07810' => 'ccan', 'Cc04_g07820' => 'ccan', 'Cc07_g10440' => 'ccan', 'CDE02G0712' => 'cde', 'CDE04G1383' => 'cde', 'CDE04G1585' => 'cde', 'CDE05G2276' => 'cde', 'CDE05G3263' => 'cde', 'CDE05G3489' => 'cde', 'CDE05G3536' => 'cde', 'CDE10G0100' => 'cde', 'CDE10G0477' => 'cde', 'CDE10G0573' => 'cde', 'CDE10G0575' => 'cde', 'CDE10G0758' => 'cde', 'CDE10G0841' => 'cde', 'CDE10G1322' => 'cde', 'Cfa009565' => 'cfa', 'Cfa009584' => 'cfa', 'Cfa009591' => 'cfa', 'Cfa009592' => 'cfa', 'Cfa009594' => 'cfa', 'Cfa019848' => 'cfa', 'Cfa019849' => 'cfa', 'Cfa019850' => 'cfa', 'Cfa019861' => 'cfa', 'Cfa023717' => 'cfa', 'Cfa025942' => 'cfa', 'Ciclev10014014m.g' => 'ccl', 'Ciclev10014402m.g' => 'ccl', 'Ciclev10014404m.g' => 'ccl', 'Ciclev10019034m.g' => 'ccl', 'Ciclev10021818m.g' => 'ccl', 'Ciclev10026225m.g' => 'ccl', 'CiPaw.07G056200' => 'cil', 'CiPaw.13G175200' => 'cil', 'CiPaw.13G176800' => 'cil', 'CiPaw.14G134700' => 'cil', 'CiPaw.14G134800' => 'cil', 'CiPaw.14G136500' => 'cil', 'CiPaw.14G136600' => 'cil', 'CiPaw.15G122300' => 'cil', 'CiPaw.15G122400' => 'cil', 'ClCG02G024010' => 'cla', 'ClCG03G014510' => 'cla', 'ClCG06G015180' => 'cla', 'ClCG06G015190' => 'cla', 'ClCG07G008340' => 'cla', 'COL.COLO4_07280' => 'col', 'COL.COLO4_07282' => 'col', 'COL.COLO4_08306' => 'col', 'COL.COLO4_08307' => 'col', 'COL.COLO4_21958' => 'col', 'COL.COLO4_35021' => 'col', 'COL.COLO4_35026' => 'col', 'Cpa.g.c36666' => 'cpa', 'Cpa.g.sc119.44' => 'cpa', 'Cpa.g.sc119.45' => 'cpa', 'Cpa.g.sc119.66' => 'cpa', 'Cpa.g.sc119.67' => 'cpa', 'Cpa.g.sc13.84' => 'cpa', 'Cpa.g.sc13.85' => 'cpa', 'Cpa.g.sc6.215' => 'cpa', 'Cpa.g.sc6.216' => 'cpa', 'Cre02.g080300' => 'cre', 'Cre12.g510850' => 'cre', 'Cre17.g726700' => 'cre', 'CsaV3_1G003070' => 'csa', 'CsaV3_1G003430' => 'csa', 'CsaV3_1G041680' => 'csa', 'CsaV3_4G005790' => 'csa', 'CsaV3_4G023320' => 'csa', 'CSS0005240' => 'camsi', 'CSS0016953' => 'camsi', 'CSS0025329' => 'camsi', 'CSS0026474' => 'camsi', 'CSS0027393' => 'camsi', 'CSS0028644' => 'camsi', 'CSS0037597' => 'camsi', 'CSS0038165' => 'camsi', 'DCAR_001986' => 'dca', 'DCAR_015119' => 'dca', 'DCAR_015122' => 'dca', 'DCAR_025990' => 'dca', 'DCAR_029576' => 'dca', 'Dinv06458' => 'din', 'Dinv06519' => 'din', 'Dinv13447' => 'din', 'Dinv23880' => 'din', 'Dinv23881' => 'din', 'Dinv33603' => 'din', 'Dinv33723' => 'din', 'Dinv36859' => 'din', 'Dinv36861' => 'din', 'Dinv38609' => 'din', 'Dinv38610' => 'din', 'Dinv39954' => 'din', 'Dinv40061' => 'din', 'Duzib084G0309' => 'dzi', 'Duzib128G0342' => 'dzi', 'Duzib147G1325' => 'dzi', 'Duzib150G1253' => 'dzi', 'Duzib170G0060' => 'dzi', 'Duzib187G1047' => 'dzi', 'Duzib205G1147' => 'dzi', 'Duzib205G1917' => 'dzi', 'Duzib264G0848' => 'dzi', 'ECA233G3676' => 'eca', 'ECA233G5672' => 'eca', 'ECA238G0650' => 'eca', 'ECA246G3353' => 'eca', 'ECA247G0777' => 'eca', 'ECA247G1947' => 'eca', 'EL10Ac4g10364' => 'bvu', 'EL10Ac4g10385' => 'bvu', 'EL10Ac5g11218' => 'bvu', 'EL10Ac5g11221' => 'bvu', 'EL10Ac5g11260' => 'bvu', 'Eucgr.J01768' => 'egr', 'Eucgr.J01807' => 'egr', 'Eucgr.J01810' => 'egr', 'Eucgr.J01811' => 'egr', 'Eucgr.J01813' => 'egr', 'Eucgr.J01816' => 'egr', 'Eucgr.J02398' => 'egr', 'Eucgr.K02640' => 'egr', 'Eucgr.K02641' => 'egr', 'Eucgr.L00842' => 'egr', 'Eucgr.L00845' => 'egr', 'Eucgr.L00848' => 'egr', 'Eucgr.L00850' => 'egr', 'Eucgr.L01217' => 'egr', 'Eucgr.L01220' => 'egr', 'FAN08G1508' => 'fan', 'FAN11G0762' => 'fan', 'FAN11G2962' => 'fan', 'FAN13G0269' => 'fan', 'FAN16G0168' => 'fan', 'FAN16G1610' => 'fan', 'FAN18G0456' => 'fan', 'FAN18G3783' => 'fan', 'FAN21G0270' => 'fan', 'FAN21G0552' => 'fan', 'FAN23G0145' => 'fan', 'FAN25G0004' => 'fan', 'FAN25G3812' => 'fan', 'FvH4_1g12151' => 'fve', 'FvH4_3g45320' => 'fve', 'FvH4_3g45550' => 'fve', 'FvH4_5g12960' => 'fve', 'FvH4_5g12961' => 'fve', 'Glyma.02G050600' => 'gma', 'Glyma.04G144600' => 'gma', 'Glyma.05G016100' => 'gma', 'Glyma.05G155800' => 'gma', 'Glyma.05G157600' => 'gma', 'Glyma.06G208401' => 'gma', 'Glyma.08G113600' => 'gma', 'Glyma.08G115350' => 'gma', 'Glyma.08G115401' => 'gma', 'Glyma.11G256800' => 'gma', 'Glyma.15G207200' => 'gma', 'Glyma.17G084100' => 'gma', 'Glyma.18G000100' => 'gma', 'Gohir.A03G073700' => 'ghi', 'Gohir.A03G073800' => 'ghi', 'Gohir.A08G079801' => 'ghi', 'Gohir.A08G079900' => 'ghi', 'Gohir.A08G227900' => 'ghi', 'Gohir.A12G061100' => 'ghi', 'Gohir.A13G212900' => 'ghi', 'Gohir.D03G100100' => 'ghi', 'Gohir.D03G100200' => 'ghi', 'Gohir.D08G089600' => 'ghi', 'Gohir.D08G248200' => 'ghi', 'Gohir.D12G061200' => 'ghi', 'Gohir.D13G216800' => 'ghi', 'Gorai.003G105200' => 'gra', 'Gorai.003G105300' => 'gra', 'Gorai.004G094300' => 'gra', 'Gorai.004G094400' => 'gra', 'Gorai.004G264800' => 'gra', 'Gorai.008G064300' => 'gra', 'Gorai.013G247300' => 'gra', 'GSVIVG01003602001' => 'vvi', 'GSVIVG01003605001' => 'vvi', 'GSVIVG01008199001' => 'vvi', 'GSVIVG01008200001' => 'vvi', 'GSVIVG01018821001' => 'vvi', 'GSVIVG01025429001' => 'vvi', 'GSVIVG01025430001' => 'vvi', 'GSVIVG01025465001' => 'vvi', 'HanXRQChr02g0043201' => 'han', 'HanXRQChr02g0056931' => 'han', 'HanXRQChr05g0157771' => 'han', 'HanXRQChr07g0186851' => 'han', 'HanXRQChr13g0405791' => 'han', 'HanXRQChr13g0414721' => 'han', 'HanXRQChr14g0441631' => 'han', 'Haze_03806' => 'cav', 'Haze_18558' => 'cav', 'Haze_18561' => 'cav', 'Haze_18562' => 'cav', 'Haze_22943' => 'cav', 'Haze_22959' => 'cav', 'Haze_22960' => 'cav', 'Haze_22965' => 'cav', 'Haze_22966' => 'cav', 'Hma1.2p1_0340F.1_g130150' => 'hma', 'Hma1.2p1_0340F.1_g130160' => 'hma', 'Hma1.2p1_0449F.1_g155090' => 'hma', 'Hma1.2p1_0449F.1_g155100' => 'hma', 'Hma1.2p1_0743F.1_g211470' => 'hma', 'Hma1.2p1_0843F.1_g227270' => 'hma', 'Hma1.2p1_0843F.1_g227290' => 'hma', 'HPP92_000824' => 'vpl', 'HPP92_009741' => 'vpl', 'HPP92_014462' => 'vpl', 'HPP92_015491' => 'vpl', 'HPP92_019890' => 'vpl', 'Hund02534' => 'sun', 'Hund02536' => 'sun', 'Hund07595' => 'sun', 'Hund16477' => 'sun', 'Hund21637' => 'sun', 'Hund25142' => 'sun', 'Hund25143' => 'sun', 'Hund25145' => 'sun', 'Hund25146' => 'sun', 'Hund31395' => 'sun', 'Hund31492' => 'sun', 'Lalb_Chr05g0229911' => 'lal', 'Lalb_Chr07g0178471' => 'lal', 'Lalb_Chr07g0186621' => 'lal', 'Lalb_Chr11g0071871' => 'lal', 'Lalb_Chr13g0295011' => 'lal', 'Lalb_Chr13g0295111' => 'lal', 'Lalb_Chr13g0302551' => 'lal', 'Lalb_Chr16g0391131' => 'lal', 'Lalb_Chr23g0278471' => 'lal', 'Lj1A542T43' => 'lonja', 'Lj1A545G61' => 'lonja', 'Lj1A545T66' => 'lonja', 'Lj1C544G1' => 'lonja', 'Lj1C547G1' => 'lonja', 'Lj1g0001947' => 'lja', 'Lj1g0024379' => 'lja', 'Lj2A463T17' => 'lonja', 'Lj2A763G34' => 'lonja', 'Lj2A763G35' => 'lonja', 'Lj4g0000058' => 'lja', 'Lj4g0001273' => 'lja', 'Lj4g0009943' => 'lja', 'Lj4g0026024' => 'lja', 'Lj5A141T90' => 'lonja', 'Lj6g0018726' => 'lja', 'Lj9A434G78' => 'lonja', 'Lj9A434T80' => 'lonja', 'Lsat_1_v5_gn_1_15601' => 'lsa', 'Lsat_1_v5_gn_2_78460' => 'lsa', 'Lsat_1_v5_gn_5_24121' => 'lsa', 'Lsat_1_v5_gn_6_51980' => 'lsa', 'Lsat_1_v5_gn_6_53100' => 'lsa', 'Manes.01G022750' => 'mes', 'Manes.01G022900' => 'mes', 'Manes.01G142900' => 'mes', 'Manes.03G087803' => 'mes', 'Manes.05G116600' => 'mes', 'Manes.14G121800' => 'mes', 'Mapoly0029s0052' => 'mpo', 'Mapoly0053s0036' => 'mpo', 'Mapoly0125s0036' => 'mpo', 'MBI04_g09730_MAGBIO' => 'mbi', 'MBI11_g24613_MAGBIO' => 'mbi', 'MBI14_g38621_MAGBIO' => 'mbi', 'MBI15_g18382_MAGBIO' => 'mbi', 'MCO09G585' => 'mco', 'MD02G1110900' => 'mdo', 'MD03G1004100' => 'mdo', 'MD03G1006300' => 'mdo', 'MD06G1208500' => 'mdo', 'MD11G1009200' => 'mdo', 'MD11G1009300' => 'mdo', 'MD11G1009400' => 'mdo', 'MD14G1218800' => 'mdo', 'MD14G1218900' => 'mdo', 'MD15G1248800' => 'mdo', 'Medtr2g056120' => 'mtr', 'Medtr3g083500' => 'mtr', 'Medtr4g112540' => 'mtr', 'Medtr8g076220' => 'mtr', 'Medtr8g085680' => 'mtr', 'Medtr8g086050' => 'mtr', 'MELO3C000769.2' => 'cme', 'MELO3C014682.2' => 'cme', 'MELO3C014683.2' => 'cme', 'MELO3C015581.2' => 'cme', 'MELO3C016372.2' => 'cme', 'MELO3C017270.2' => 'cme', 'MELO3C017271.2' => 'cme', 'MELO3C030779.2' => 'cme', 'MELO3C031046.2' => 'cme', 'Migut.D01488' => 'egut', 'Migut.D01489' => 'egut', 'Migut.L00041' => 'egut', 'Migut.L00371' => 'egut', 'Migut.L00380' => 'egut', 'Migut.L00381' => 'egut', 'Migut.N00567' => 'egut', 'Migut.N00569' => 'egut', 'MSTRG.16793' => 'ama', 'MSTRG.18014' => 'ama', 'MSTRG.3827' => 'ama', 'Nitab4.5_0000136g0090' => 'nta', 'Nitab4.5_0000208g0110' => 'nta', 'Nitab4.5_0000646g0170' => 'nta', 'Nitab4.5_0000646g0220' => 'nta', 'Nitab4.5_0000799g0100' => 'nta', 'Nitab4.5_0000827g0060' => 'nta', 'Nitab4.5_0003134g0150' => 'nta', 'Nitab4.5_0004342g0070' => 'nta', 'Nitab4.5_0004342g0090' => 'nta', 'Nitab4.5_0005544g0060' => 'nta', 'Nitab4.5_0006132g0050' => 'nta', 'Nitab4.5_0006358g0020' => 'nta', 'Nitab4.5_0012660g0050' => 'nta', 'Nn1g03529' => 'nnu', 'Nn2g15811' => 'nnu', 'Nn3g17642' => 'nnu', 'Nn4g23634' => 'nnu', 'Nn5g29225' => 'nnu', 'Nn6g32246' => 'nnu', 'Nn7g35865' => 'nnu', 'Oeu010195.1' => 'oeu', 'Oeu014430.1' => 'oeu', 'Oeu017835.1' => 'oeu', 'Oeu021897.1' => 'oeu', 'Oeu021938.1' => 'oeu', 'Oeu024284.1' => 'oeu', 'Oeu024286.2' => 'oeu', 'Oeu024287.2' => 'oeu', 'Oeu024288.1' => 'oeu', 'Oeu031927.2' => 'oeu', 'Oeu052725.1' => 'oeu', 'Os03g0255200' => 'osa', 'Os03g0805500' => 'osa', 'Os05g0447500' => 'osa', 'Os05g0447580' => 'osa', 'Os08g0416900' => 'osa', 'Os09g0380000' => 'osa', 'Os09g0380050' => 'osa', 'Os09g0380200' => 'osa', 'Peaxi162Scf00017g03137' => 'pax', 'Peaxi162Scf00017g03138' => 'pax', 'Peaxi162Scf00083g01232' => 'pax', 'Peaxi162Scf00119g00129' => 'pax', 'Peaxi162Scf00738g00220' => 'pax', 'Peaxi162Scf00799g00006' => 'pax', 'Peaxi162Scf00970g00016' => 'pax', 'PGR044G0291' => 'pgr', 'PGR044G2308' => 'pgr', 'PGR102G1582' => 'pgr', 'PGR119G0322' => 'pgr', 'PGSC0003DMG400004274' => 'stu', 'PGSC0003DMG400012013' => 'stu', 'PGSC0003DMG401024509' => 'stu', 'PGSC0003DMG402024509' => 'stu', 'PGSC0003DMG403024509' => 'stu', 'Phvul.001G269300' => 'pvu', 'Phvul.002G235900' => 'pvu', 'Phvul.002G237900' => 'pvu', 'Phvul.003G180200' => 'pvu', 'Phvul.003G259500' => 'pvu', 'Phvul.009G191300' => 'pvu', 'Potri.001G004200' => 'ptr', 'Potri.001G006600' => 'ptr', 'Potri.001G006700' => 'ptr', 'Potri.003G220800' => 'ptr', 'Potri.007G015600' => 'ptr', 'Potri.012G057700' => 'ptr', 'Potri.015G056000' => 'ptr', 'Pp3c10_20930' => 'ppa', 'Pp3c11_16200' => 'ppa', 'Pp3c11_22280' => 'ppa', 'Pp3c15_20170' => 'ppa', 'Pp3c16_8680' => 'ppa', 'Pp3c1_12140' => 'ppa', 'Pp3c20_20440' => 'ppa', 'Pp3c5_15640' => 'ppa', 'Pp3c7_4610' => 'ppa', 'Pp3c9_17650' => 'ppa', 'PRCOL_00000650' => 'pco', 'PRCOL_00006374' => 'pco', 'Prupe.5G213000' => 'ppe', 'Prupe.5G213100' => 'ppe', 'Prupe.6G003600' => 'ppe', 'Prupe.6G005900' => 'ppe', 'Prupe.7G165300' => 'ppe', 'Psat1g027640' => 'psa', 'Psat4g044600' => 'psa', 'Psat4g097360' => 'psa', 'Psat5g101160' => 'psa', 'Psat5g238800' => 'psa', 'Psat5g238960' => 'psa', 'Psat7g071560' => 'psa', 'Psat7g073760' => 'psa', 'PSO017G2621' => 'pso', 'PSO063G2111' => 'pso', 'PSO133G0056' => 'pso', 'PSO170G2424' => 'pso', 'PSO210G6018' => 'pso', 'PSO339G2492' => 'pso', 'PSO339G4083' => 'pso', 'PSO339G5835' => 'pso', 'PSO384G0444' => 'pso', 'PSO478G1449' => 'pso', 'QL01p008424' => 'qlo', 'QL01p008442' => 'qlo', 'QL01p009034' => 'qlo', 'QL01p054033' => 'qlo', 'QL06p033956' => 'qlo', 'QL10p022070' => 'qlo', 'QL10p022078' => 'qlo', 'RcHm_v2.0_Chr2g0099891' => 'rch', 'RcHm_v2.0_Chr5g0083011' => 'rch', 'RcHm_v2.0_Chr5g0083021' => 'rch', 'RcHm_v2.0_Chr5g0083091' => 'rch', 'RcHm_v2.0_Chr5g0083741' => 'rch', 'RcHm_v2.0_Chr7g0184201' => 'rch', 'RcHm_v2.0_Chr7g0184211' => 'rch', 'Rhsim03G0149100' => 'rsi', 'Rhsim11G0054400' => 'rsi', 'Rhsim11G0153300' => 'rsi', 'Rhsim12G0118500' => 'rsi', 'Rhsim12G0145800' => 'rsi', 'Rhsim13G0231100' => 'rsi', 'Rhsim13G0231200' => 'rsi', 'RhsimUnG0124500' => 'rsi', 'Sabra01G0002900' => 'sbr', 'Sabra01G0004900' => 'sbr', 'Sabra01G0005200' => 'sbr', 'Sabra03G0164300' => 'sbr', 'Sabra07G0012500' => 'sbr', 'Sabra12G0042300' => 'sbr', 'Sabra15G0081300' => 'sbr', 'SalBow1G5230' => 'sbo', 'SalBow3G2324' => 'sbo', 'SalBow5G3073' => 'sbo', 'SalBow6G0160' => 'sbo', 'SalBow6G2556' => 'sbo', 'SalBow6G3750' => 'sbo', 'SalBow6G5302' => 'sbo', 'SalBow6G5837' => 'sbo', 'SalBow6G6992' => 'sbo', 'SalBow7G4072' => 'sbo', 'Sc09g0000160' => 'sci', 'Sc10g0005090' => 'sci', 'Sc10g0009640' => 'sci', 'Sc16g0002370' => 'sci', 'Sc16g0012210' => 'sci', 'Sc21g0002730' => 'sci', 'Sed0008961' => 'sed', 'Sed0011933' => 'sed', 'Sed0013361' => 'sed', 'Sed0013618' => 'sed', 'Sed0014885' => 'sed', 'Sed0015932' => 'sed', 'Sed0021594' => 'sed', 'Sed0023383' => 'sed', 'Sed0024847' => 'sed', 'SEGI_04814' => 'sgi', 'SEGI_07140' => 'sgi', 'SEGI_09587' => 'sgi', 'SEGI_14567' => 'sgi', 'SEGI_16736' => 'sgi', 'SEGI_19391' => 'sgi', 'SEGI_20338' => 'sgi', 'SEGI_25517' => 'sgi', 'SEGI_26087' => 'sgi', 'SEGI_28669' => 'sgi', 'SEGI_29188' => 'sgi', 'SEGI_37688' => 'sgi', 'SEGI_38078' => 'sgi', 'SEGI_40825' => 'sgi', 'SGA_v2.0_scaffold144G35872' => 'sas', 'SGA_v2.0_scaffold42G16048' => 'sas', 'SGA_v2.0_scaffold47G17676' => 'sas', 'SGA_v2.0_scaffold58G20565' => 'sas', 'SGA_v2.0_scaffold6G03282' => 'sas', 'SHI18975' => 'shi', 'SHI18976' => 'shi', 'SHI18979' => 'shi', 'SHI31272' => 'shi', 'SHI31275' => 'shi', 'SHI31278' => 'shi', 'SHI31294' => 'shi', 'SHI31296' => 'shi', 'SHI31298' => 'shi', 'SHI31299' => 'shi', 'SHI31300' => 'shi', 'SHI31301' => 'shi', 'SMO140G0033' => 'smo', 'SMO141G0224' => 'smo', 'SMO165G0085' => 'smo', 'SMO348G0020' => 'smo', 'SMO348G0037' => 'smo', 'SMO365G0018' => 'smo', 'Solyc02g062350.3' => 'sly', 'Solyc03g114460.3' => 'sly', 'Solyc03g114470.2' => 'sly', 'Solyc04g039950.4' => 'sly', 'Solyc12g038400.2' => 'sly', 'Solyc12g100340.1' => 'sly', 'Sopen02g013340' => 'spe', 'Sopen03g033560' => 'spe', 'Sopen03g033570' => 'spe', 'Sopen04g010120' => 'spe', 'Sopen12g018540' => 'spe', 'Sopen12g035010' => 'spe', 'Sp1g40980' => 'spa', 'Sp1g41000' => 'spa', 'Sp2g24070' => 'spa', 'Sp2g24080' => 'spa', 'Sp5g11070' => 'spa', 'Sp6g34760' => 'spa', 'TAR371G0809' => 'tar', 'TAR622G0417' => 'tar', 'TAR622G0735' => 'tar', 'TAR623G0474' => 'tar', 'TAR623G0710' => 'tar', 'TAR628G0296' => 'tar', 'TAR636G3372' => 'tar', 'THA.LOC104800953' => 'tha', 'THA.LOC104810327' => 'tha', 'THA.LOC104818369' => 'tha', 'THA.LOC104821319' => 'tha', 'THA.LOC104822677' => 'tha', 'THA.LOC104822680' => 'tha', 'Thecc.01G022900' => 'tca', 'Thecc.03G092000' => 'tca', 'Thecc.03G113900' => 'tca', 'Thecc.03G114000' => 'tca', 'Thecc.05G133300' => 'tca', 'Thecc.09G209100' => 'tca', 'Thecc.09G209300' => 'tca', 'Thhalv10003719m.g' => 'esa', 'Thhalv10004795m.g' => 'esa', 'Thhalv10010613m.g' => 'esa', 'Thhalv10011178m.g' => 'esa', 'Thhalv10011267m.g' => 'esa', 'Thhalv10012088m.g' => 'esa', 'TPR.G19327' => 'tpr', 'TPR.G21309' => 'tpr', 'TPR.G23891' => 'tpr', 'TPR.G24370' => 'tpr', 'TPR.G24398' => 'tpr', 'TPR.G30048' => 'tpr', 'TWI09G0964' => 'twi', 'TWI15G0023' => 'twi', 'TWI32G0740' => 'twi', 'TWI60G0248' => 'twi', 'TWI60G0363' => 'twi', 'TWI60G0851' => 'twi', 'TWI73G0351' => 'twi', 'TWI81G0887' => 'twi', 'unitig_27.g24914' => 'ugi', 'unitig_61.g26332' => 'ugi', 'vmacro01360' => 'vma', 'vmacro04224' => 'vma', 'vmacro04225' => 'vma', 'vmacro06915' => 'vma', 'vmacro06919' => 'vma', 'vmacro06920' => 'vma', 'vmacro16463' => 'vma', 'vmacro16464' => 'vma', 'vmacro17647' => 'vma', 'VMungo0251G0087' => 'vmu', 'VMungo0251G1995' => 'vmu', 'VMungo0251G3231' => 'vmu', 'VMungo0251G3631' => 'vmu', 'VMungo1080G0389' => 'vmu', 'VMungo1080G1023' => 'vmu', 'VMungo1080G1230' => 'vmu', 'VMungo1080G1824' => 'vmu', 'VMungo1215G0690' => 'vmu', 'VMungo1309G0490' => 'vmu', 'VMungo1383G3575' => 'vmu', 'Zm00001eb011060' => 'zma', 'Zm00001eb026570' => 'zma', 'Zm00001eb061470' => 'zma', 'Zm00001eb091210' => 'zma', 'Zm00001eb179040' => 'zma', 'Zm00001eb311650' => 'zma', 'Zm00001eb311660' => 'zma', 'Zm00001eb379470' => 'zma', 'Zm00001eb391150' => 'zma', 'Zm00001eb398380' => 'zma' ) $gf_id = 'HOM05D000764' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000764' ) $data_identifier = 'HOM05D000764' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 5, 'aag' => (int) 5, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 8, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 8, 'acertr' => (int) 6, 'cqu' => (int) 9, 'bca' => (int) 12, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 16, 'cansat' => (int) 7, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 14, 'cfa' => (int) 11, 'ccl' => (int) 6, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 13, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 15, 'fan' => (int) 13, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 5, 'sun' => (int) 11, 'lal' => (int) 9, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 8, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 7, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 6, 'sed' => (int) 9, 'sgi' => (int) 14, 'sas' => (int) 5, 'shi' => (int) 12, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 2, 'vma' => (int) 9, 'vmu' => (int) 11, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb398380' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1